OICR Genomics WGTS Pipeline documentation

Accredited Pipelines

• Informatics Overview
• Updates and Upgrades
• Variables and Observations to Record
• Whole Genome and Transcriptome (WGTS) version 6.0

Data Review and Reporting

• Overview of Clinical Reporting
• Before Starting
• Set up a Djerba working directory
• Generate and Interpret the Report
• Review the Draft Report
• Generate QC Report
• Upload to the Requisition System
• Revise a Draft Report
• Amended Reports
• Failed Reports
• Additional Considerations
• Whole Genome & Transcriptome Sequencing (WGTS) Reports
• Reporting Tips

Software

• Requisition System
• ETL/Dashi (200824-1630)
• Dimsum
• Djerba
• MISO (1.14+)
• Modulator (0.1)
• Pinery (2.13.0+)
• Provenance Client (2.5.17+)
• Provenance records
• Requisition system
• Run Scanner (1.12.0+)
• Shesmu (1.4.2+)
• Vidarr (2.0.3)
• Whizbam
• Other Software